PH01000632G0570's details annotation
1.Annotation
ICBR annotation: miro, putative, expressed
Blast result AT4G02080 : 1.00E-89
Blast annotation: secretion-associated RAS super family 2
2.Location
Scaffold: PH01000632
Strand: -
| Region | Start | End |
| gene | 403532 | 410203 |
| mRNA | 403532 | 410203 |
| exon | 403532 | 404082 |
| exon | 404275 | 404330 |
| exon | 407195 | 407309 |
| exon | 408731 | 408862 |
| exon | 408988 | 410203 |
| CDS | 403762 | 404082 |
| CDS | 404275 | 404330 |
| CDS | 407195 | 407309 |
| CDS | 408731 | 408862 |
| CDS | 408988 | 409116 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000580 | bZIP Transcription_Regulator(from PlantTFDB) sequence-specific DNA binding, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00025.20 | Arf | 8 | 87 |
| PF00025.20 | Arf | 145 | 249 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005525 | GTP binding |
| GO:0005622 | intracellular |
| GO:0006886 | intracellular protein transport |
| GO:0007264 | small GTPase mediated signal transduction |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.