PH01000636G0020's details annotation
1.Annotation
ICBR annotation: elongation factor Ts, putative, expressed
Blast result AT4G11120 : 2.10E-26
Blast annotation: translation elongation factor Ts (EF-Ts), putative
2.Location
Scaffold: PH01000636
Strand: +
| Region | Start | End |
| gene | 6901 | 9445 |
| mRNA | 6901 | 9445 |
| exon | 6901 | 7683 |
| exon | 8446 | 8571 |
| exon | 8658 | 8746 |
| exon | 9060 | 9445 |
| CDS | 7519 | 7683 |
| CDS | 8446 | 8571 |
| CDS | 8658 | 8746 |
| CDS | 9060 | 9105 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00889.18 | EF_TS | 51 | 123 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003746 | translation elongation factor activity |
| GO:0005622 | intracellular |
| GO:0006414 | translational elongation |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.