PH01000641G0820's details annotation
1.Annotation
ICBR annotation: S10/S20 domain containing ribosomal protein, putative, expressed
Blast result AT5G62300 : 9.80E-49
Blast annotation: Ribosomal protein S10p/S20e family protein
2.Location
Scaffold: PH01000641
Strand: -
| Region | Start | End |
| gene | 561188 | 564451 |
| mRNA | 561188 | 564451 |
| exon | 561188 | 562661 |
| exon | 562914 | 563035 |
| exon | 564021 | 564134 |
| exon | 564224 | 564451 |
| CDS | 562503 | 562661 |
| CDS | 562914 | 563035 |
| CDS | 564021 | 564134 |
| CDS | 564224 | 564359 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00338.21 | Ribosomal_S10 | 32 | 124 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Ribosome | small subunit ribosomal protein S20e | ko03011 | K02969 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003735 | structural constituent of ribosome |
| GO:0005622 | intracellular |
| GO:0005840 | ribosome |
| GO:0006412 | translation |
| GO:0015935 | small ribosomal subunit |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.