Annotation of co-expression genes

PH01000642G0470's details annotation

1.Annotation

ICBR annotation: beta-catenin-like protein 1, putative, expressed

Blast result AT3G02710 : 3.00E-139
Blast annotation: ARM repeat superfamily protein

2.Location

Scaffold: PH01000642
Strand: -

RegionStartEnd
gene272964280670
mRNA272964280670
exon272964274128
exon275561275685
exon275927275986
exon276543276624
exon276732276769
exon276935277016
exon277562277658
exon278437278521
exon279373280670
CDS273717274128
CDS275561275685
CDS275927275986
CDS276543276624
CDS276732276769
CDS276935277016
CDS277562277658
CDS278437278521
CDS279373280497

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction details
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000894regulation of ARF protein signal transduction,
phospholipid transport,
proton-transporting V-type ATPase, V0 domain,
ATP hydrolysis coupled proton transport,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF08216.10CTNNBL30121
PF02620.16DUF177566697

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
Spliceosomebeta-catenin-like protein 1ko03041K12864

10.Gene Ontology

GO AccessionGO Annotation
GO:0005488binding

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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