PH01000646G0440's details annotation
1.Annotation
ICBR annotation: methyltransferase, putative, expressed
Blast result AT4G29510 : 7.00E-171
Blast annotation: arginine methyltransferase 11
2.Location
Scaffold: PH01000646
Strand: +
| Region | Start | End |
| gene | 314478 | 319086 |
| mRNA | 314478 | 319086 |
| exon | 314478 | 314815 |
| exon | 316115 | 316125 |
| exon | 316459 | 316614 |
| exon | 317135 | 317198 |
| exon | 317308 | 317450 |
| exon | 317635 | 317722 |
| exon | 317881 | 317996 |
| exon | 318092 | 318242 |
| exon | 318341 | 319086 |
| CDS | 314596 | 314815 |
| CDS | 316115 | 316125 |
| CDS | 316459 | 316614 |
| CDS | 317135 | 317198 |
| CDS | 317308 | 317450 |
| CDS | 317635 | 317722 |
| CDS | 317881 | 317996 |
| CDS | 318092 | 318242 |
| CDS | 318341 | 318546 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000433 | Ribosome_biogenesis_in_eukaryotes ATP-dependent helicase activity, threonine-tRNA ligase activity, helicase activity, |
| coexpression network | CFinderM000615 | cellular protein metabolic process, RLK-Pelle_RLCK-VIIa-2 (from iTAK) protein methylation, protein refolding, RNA_degradation |
| coexpression network | CFinderM001030 | protein import into mitochondrial inner membrane, RLK-Pelle_L-LEC (from iTAK) protein methylation, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF13649.5 | Methyltransf_25 | 105 | 201 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0006479 | protein methylation |
| GO:0008168 | methyltransferase activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.