PH01000648G0610's details annotation
1.Annotation
ICBR annotation: asparagine synthetase, putative, expressed
Blast result AT5G65010 : 0.00E+00
Blast annotation: asparagine synthetase 2
2.Location
Scaffold: PH01000648
Strand: -
| Region | Start | End |
| gene | 408930 | 412798 |
| mRNA | 408930 | 412798 |
| exon | 408930 | 409410 |
| exon | 409522 | 409629 |
| exon | 409717 | 409803 |
| exon | 409893 | 409973 |
| exon | 410067 | 410201 |
| exon | 410302 | 410523 |
| exon | 410838 | 410918 |
| exon | 411014 | 411175 |
| exon | 411280 | 411470 |
| exon | 411643 | 411823 |
| exon | 411906 | 412004 |
| exon | 412105 | 412203 |
| exon | 412554 | 412798 |
| CDS | 409174 | 409410 |
| CDS | 409522 | 409629 |
| CDS | 409717 | 409803 |
| CDS | 409893 | 409973 |
| CDS | 410067 | 410201 |
| CDS | 410302 | 410523 |
| CDS | 410838 | 410918 |
| CDS | 411014 | 411175 |
| CDS | 411280 | 411470 |
| CDS | 411643 | 411823 |
| CDS | 411906 | 412004 |
| CDS | 412105 | 412203 |
| CDS | 412554 | 412712 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF13537.5 | GATase_7 | 62 | 192 |
| PF00733.20 | Asn_synthase | 237 | 388 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Nitrogen metabolism | asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4] | ko00910 | K01953 |
| 255 Alanine, aspartate and glutamate metabolism | asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4] | K01953 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0004066 | asparagine synthase (glutamine-hydrolyzing) activity |
| GO:0006529 | asparagine biosynthetic process |
| GO:0008152 | metabolic process |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.