PH01000650G0460's details annotation
1.Annotation
ICBR annotation: ribosomal protein S13p/S18e, putative, expressed
Blast result AT5G14320 : 3.00E-48
Blast annotation: Ribosomal protein S13/S18 family
2.Location
Scaffold: PH01000650
Strand: -
| Region | Start | End |
| gene | 376470 | 379379 |
| mRNA | 376470 | 379379 |
| exon | 376470 | 377226 |
| exon | 377445 | 377684 |
| exon | 378346 | 379379 |
| CDS | 377050 | 377226 |
| CDS | 377445 | 377684 |
| CDS | 378346 | 378444 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00416.21 | Ribosomal_S13 | 48 | 152 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Ribosome | small subunit ribosomal protein S13 | ko03011 | K02952 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003676 | nucleic acid binding |
| GO:0003723 | RNA binding |
| GO:0003735 | structural constituent of ribosome |
| GO:0005622 | intracellular |
| GO:0005840 | ribosome |
| GO:0006412 | translation |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.