PH01000650G0640's details annotation
1.Annotation
ICBR annotation: Os3bglu8 - beta-glucosidase, exo-beta-glucansase, high similarity to Os3bglu7, expressed
Blast result AT3G18080 : 1.70E-77
Blast annotation: B-S glucosidase 44
2.Location
Scaffold: PH01000650
Strand: +
| Region | Start | End |
| gene | 490377 | 494299 |
| mRNA | 490377 | 494299 |
| exon | 490377 | 491700 |
| exon | 492393 | 492451 |
| exon | 492885 | 492960 |
| exon | 493039 | 493110 |
| exon | 493210 | 493297 |
| exon | 493770 | 494299 |
| CDS | 491643 | 491700 |
| CDS | 492393 | 492451 |
| CDS | 492885 | 492960 |
| CDS | 493039 | 493110 |
| CDS | 493210 | 493297 |
| CDS | 493770 | 494223 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00232.17 | Glyco_hydro_1 | 4 | 204 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003824 | catalytic activity |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.