PH01000653G0440's details annotation
1.Annotation
ICBR annotation: carbohydrate binding protein, putative
Blast result AT1G11300 : 4.00E-162
Blast annotation: protein serine/threonine kinases;protein kinases;ATP binding;sugar binding;kinases;carbohydrate binding
2.Location
Scaffold: PH01000653
Strand: +
| Region | Start | End |
| gene | 270403 | 280747 |
| mRNA | 270403 | 280747 |
| exon | 270403 | 273900 |
| exon | 274871 | 274946 |
| exon | 275037 | 275247 |
| exon | 275336 | 275573 |
| exon | 275667 | 275817 |
| exon | 275944 | 276245 |
| exon | 276937 | 276940 |
| exon | 277214 | 278453 |
| exon | 279106 | 279299 |
| exon | 279409 | 279545 |
| exon | 280043 | 280130 |
| exon | 280311 | 280747 |
| CDS | 273728 | 273900 |
| CDS | 274871 | 274946 |
| CDS | 275037 | 275247 |
| CDS | 275336 | 275573 |
| CDS | 275667 | 275817 |
| CDS | 275944 | 276245 |
| CDS | 276937 | 276940 |
| CDS | 277214 | 278453 |
| CDS | 279106 | 279299 |
| CDS | 279409 | 279545 |
| CDS | 280043 | 280130 |
| CDS | 280311 | 280607 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF07714.16 | Pkinase_Tyr | 71 | 267 |
| PF01453.23 | B_lectin | 428 | 539 |
| PF00954.19 | S_locus_glycop | 583 | 681 |
| PF08276.10 | PAN_2 | 704 | 770 |
| PF00069.24 | Pkinase | 848 | 908 |
| PF07714.16 | Pkinase_Tyr | 911 | 940 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0004672 | protein kinase activity |
| GO:0004674 | protein serine/threonine kinase activity |
| GO:0005524 | ATP binding |
| GO:0006468 | protein phosphorylation |
| GO:0016772 | transferase activity, transferring phosphorus-containing groups |
| GO:0048544 | recognition of pollen |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.