Annotation of co-expression genes

PH01000654G0080's details annotation

1.Annotation

ICBR annotation: chaperone protein clpB 1, putative, expressed

Blast result AT5G15450 : 0.00E+00
Blast annotation: casein lytic proteinase B3

2.Location

Scaffold: PH01000654
Strand: -

RegionStartEnd
gene4379449443
mRNA4379449443
exon4379444686
exon4491145837
exon4593546200
exon4633746645
exon4759147741
exon4827648330
exon4841648611
exon4926649443
CDS4436344686
CDS4491145837
CDS4593546200
CDS4633746645
CDS4759147741
CDS4827648330
CDS4841648611
CDS4926649272

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000533MBF1 Transcription_Regulator(from iTAK)
Protein_processing_in_endoplasmic_reticulum
cytoplasm,
RLK-Pelle_LRK10L-2 (from iTAK)
protein metabolic process,
protein refolding,
response to heat,
protein processing,
RNA_degradation

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00004.28AAA53185
PF07724.13AAA_2450618
PF10431.8ClpB_D2-small625704

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0000166nucleotide binding
GO:0005524ATP binding
GO:0005737cytoplasm
GO:0009408response to heat
GO:0016485protein processing
GO:0017111nucleoside-triphosphatase activity

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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