Annotation of co-expression genes

PH01000657G0130's details annotation

1.Annotation

ICBR annotation: protein kinase family protein, putative, expressed

Blast result AT1G67890 : 2.00E-159
Blast annotation: PAS domain-containing protein tyrosine kinase family protein

2.Location

Scaffold: PH01000657
Strand: -

RegionStartEnd
gene117775126463
mRNA117775126463
exon117775118064
exon118129118240
exon118327118421
exon119032119122
exon119164119385
exon119471119538
exon119651119719
exon119786119884
exon120406120484
exon121880121980
exon122691122759
exon122842122882
exon123311123944
exon124076124505
exon125748126463
CDS117801118064
CDS118129118240
CDS118327118421
CDS119032119122
CDS119164119385
CDS119471119538
CDS119651119719
CDS119786119884
CDS120406120484
CDS121880121980
CDS122691122759
CDS122842122882
CDS123311123944
CDS124076124505
CDS125748126052

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF13426.6PAS_992189
PF07714.16Pkinase_Tyr449661
PF07714.16Pkinase_Tyr745783

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0004672protein kinase activity
GO:0004674protein serine/threonine kinase activity
GO:0004871signal transducer activity
GO:0005524ATP binding
GO:0006468protein phosphorylation
GO:0007165signal transduction
GO:0016772transferase activity, transferring phosphorus-containing groups

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.