Annotation of co-expression genes

PH01000660G0090's details annotation

1.Annotation

ICBR annotation: acyl-CoA synthetase protein, putative, expressed

Blast result AT2G04350 : 0.00E+00
Blast annotation: AMP-dependent synthetase and ligase family protein

2.Location

Scaffold: PH01000660
Strand: +

RegionStartEnd
gene7306781573
mRNA7306781573
exon7306774176
exon7426274342
exon7489675162
exon7717477305
exon7738977562
exon7820078339
exon7881478909
exon7895879075
exon7947979610
exon7968879827
exon7989580069
exon8132181573
CDS7366774176
CDS7426274342
CDS7489675162
CDS7717477305
CDS7738977562
CDS7820078339
CDS7881478909
CDS7895879075
CDS7947979610
CDS7968879827
CDS7989580069
CDS8132181485

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction details
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM001731Peroxisome
Fatty_acid_metabolism

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00501.27AMP-binding118586

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
Fatty acid metabolismlong-chain acyl-CoA synthetase [EC:6.2.1.3]ko01212K01897
Peroxisomelong-chain acyl-CoA synthetase [EC:6.2.1.3]ko04146K01897

10.Gene Ontology

GO AccessionGO Annotation
GO:0003824catalytic activity
GO:0008152metabolic process

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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