PH01000662G0380's details annotation
1.Annotation
ICBR annotation: anaphase-promoting complex subunit 11, putative, expressed
Blast result AT5G20570 : 1.30E-52
Blast annotation: RING-box 1
2.Location
Scaffold: PH01000662
Strand: +
| Region | Start | End |
| gene | 228163 | 230670 |
| mRNA | 228163 | 230670 |
| exon | 228163 | 230330 |
| exon | 230440 | 230670 |
| CDS | 230207 | 230330 |
| CDS | 230440 | 230537 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF12678.6 | zf-rbx1 | 46 | 104 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Protein processing in endoplasmic reticulum | RING-box protein 1 | ko04141 | K03868 |
| Ubiquitin mediated proteolysis | RING-box protein 1 | ko04120 | K03868 |
| Nucleotide excision repair | RING-box protein 1 | ko03420 | K03868 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
| GO:0008270 | zinc ion binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.