PH01000672G0430's details annotation
1.Annotation
ICBR annotation: helicase conserved C-terminal domain containing protein, expressed
Blast result AT3G12810 : 0.00E+00
Blast annotation: SNF2 domain-containing protein / helicase domain-containing protein
2.Location
Scaffold: PH01000672
Strand: +
| Region | Start | End |
| gene | 285630 | 298691 |
| mRNA | 285630 | 298691 |
| exon | 285630 | 286144 |
| exon | 286419 | 286499 |
| exon | 286723 | 286830 |
| exon | 287180 | 287268 |
| exon | 287357 | 287496 |
| exon | 287580 | 287629 |
| exon | 287990 | 288125 |
| exon | 288220 | 288303 |
| exon | 288400 | 288521 |
| exon | 288636 | 288674 |
| exon | 289401 | 289436 |
| exon | 289639 | 289707 |
| exon | 290566 | 290628 |
| exon | 290706 | 293859 |
| exon | 294000 | 294064 |
| exon | 294142 | 294212 |
| exon | 295385 | 296123 |
| exon | 296745 | 297214 |
| exon | 297392 | 298691 |
| CDS | 286085 | 286144 |
| CDS | 286419 | 286499 |
| CDS | 286723 | 286830 |
| CDS | 287180 | 287268 |
| CDS | 287357 | 287496 |
| CDS | 287580 | 287629 |
| CDS | 287990 | 288125 |
| CDS | 288220 | 288303 |
| CDS | 288400 | 288521 |
| CDS | 288636 | 288674 |
| CDS | 289401 | 289436 |
| CDS | 289639 | 289707 |
| CDS | 290566 | 290628 |
| CDS | 290706 | 293859 |
| CDS | 294000 | 294064 |
| CDS | 294142 | 294212 |
| CDS | 295385 | 296123 |
| CDS | 296745 | 297214 |
| CDS | 297392 | 297803 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000545 | binding, SNF2 Transcription_Regulator(from iTAK) helicase activity, ubiquitin-protein ligase activity, cellular protein modification process, TOR_signaling nucleic acid binding, TORC1_complex DNA binding, hydrolase_activity,_acting_on_acid_anhydrides RNA metabolic process, RNA_transport nuclear-transcribed mRNA catabolic process, nonsense-mediated decay, Ubiquitin_mediated_proteolysis nucleotide binding, RNA binding, ATP binding, protein binding, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | SNF2 |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF07529.12 | HSA | 27 | 100 |
| PF00176.22 | SNF2_N | 506 | 779 |
| PF00271.30 | Helicase_C | 1029 | 1141 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003676 | nucleic acid binding |
| GO:0003677 | DNA binding |
| GO:0004386 | helicase activity |
| GO:0005524 | ATP binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.