PH01000674G0630's details annotation
1.Annotation
ICBR annotation: bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase,chloroplast precursor, putative, expressed
Blast result AT3G06350 : 5.20E-46
Blast annotation: dehydroquinate dehydratase, putative / shikimate dehydrogenase, putative
2.Location
Scaffold: PH01000674
Strand: +
| Region | Start | End |
| gene | 409848 | 413489 |
| mRNA | 409848 | 413489 |
| exon | 409848 | 411890 |
| exon | 412176 | 412281 |
| exon | 412740 | 413489 |
| CDS | 411667 | 411890 |
| CDS | 412176 | 412281 |
| CDS | 412740 | 413000 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01487.14 | DHquinase_I | 36 | 183 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003824 | catalytic activity |
| GO:0003855 | 3-dehydroquinate dehydratase activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.