Annotation of co-expression genes

PH01000674G0710's details annotation

1.Annotation

ICBR annotation: syntaxin, putative, expressed

Blast result AT3G03800 : 2.20E-86
Blast annotation: syntaxin of plants 131

2.Location

Scaffold: PH01000674
Strand: -

RegionStartEnd
gene479444482937
mRNA479444482937
exon479444479959
exon480051480116
exon480194480274
exon480331480444
exon480533480558
exon480664480724
exon480978481020
exon481112481185
exon481328481416
exon481522481570
exon481848481904
exon482109482225
exon482296482937
CDS479801479959
CDS480051480116
CDS480194480274
CDS480331480444
CDS480533480558
CDS480664480724
CDS480978481020
CDS481112481185
CDS481328481416
CDS481522481570
CDS481848481904
CDS482109482225
CDS482296482337

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00804.24Syntaxin40244
PF05739.18SNARE245297

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
SNARE interactions in vesicular transportsyntaxin 1B/2/3ko04130K08486

10.Gene Ontology

GO AccessionGO Annotation
GO:0005484SNAP receptor activity
GO:0005515protein binding
GO:0006886intracellular protein transport
GO:0016020membrane
GO:0016192vesicle-mediated transport

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.