PH01000675G0120's details annotation
1.Annotation
ICBR annotation: reticulon domain containing protein, putative, expressed
Blast result AT5G58000 : 3.30E-48
Blast annotation: Reticulon family protein
2.Location
Scaffold: PH01000675
Strand: -
| Region | Start | End |
| gene | 80691 | 84010 |
| mRNA | 80691 | 84010 |
| exon | 80691 | 81270 |
| exon | 81654 | 81719 |
| exon | 82250 | 82319 |
| exon | 82431 | 82590 |
| exon | 82678 | 82752 |
| exon | 82864 | 82966 |
| exon | 83057 | 83144 |
| exon | 83276 | 83292 |
| exon | 83421 | 83489 |
| exon | 83582 | 84010 |
| CDS | 81185 | 81270 |
| CDS | 81654 | 81719 |
| CDS | 82250 | 82319 |
| CDS | 82431 | 82590 |
| CDS | 82678 | 82752 |
| CDS | 82864 | 82966 |
| CDS | 83057 | 83144 |
| CDS | 83276 | 83292 |
| CDS | 83421 | 83489 |
| CDS | 83582 | 83612 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF02453.16 | Reticulon | 69 | 226 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005783 | endoplasmic reticulum |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.