PH01000680G0690's details annotation
1.Annotation
ICBR annotation: cupin domain containing protein, expressed
Blast result AT2G28680 : 3.00E-123
Blast annotation: RmlC-like cupins superfamily protein
2.Location
Scaffold: PH01000680
Strand: +
| Region | Start | End |
| gene | 455228 | 460175 |
| mRNA | 455228 | 460175 |
| exon | 455228 | 455527 |
| exon | 456209 | 457238 |
| exon | 457960 | 458239 |
| exon | 459620 | 459805 |
| exon | 459871 | 460175 |
| CDS | 455332 | 455527 |
| CDS | 456209 | 457238 |
| CDS | 457960 | 458239 |
| CDS | 459620 | 459805 |
| CDS | 459871 | 459990 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000195 | pyridoxine biosynthetic process, S-adenosylmethionine_biosynthetic_process proteolysis, pyridoxamine-phosphate oxidase activity, oxidoreductase activity, acting on the CH-NH2 group of donors, methionine adenosyltransferase activity, Endocytosis aminopeptidase activity, |
| coexpression network | CFinderM001239 | DNA repair, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00190.21 | Cupin_1 | 8 | 158 |
| PF00190.21 | Cupin_1 | 199 | 295 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0045735 | nutrient reservoir activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.