PH01000683G0630's details annotation
1.Annotation
ICBR annotation: ATPase, putative, expressed
Blast result AT3G28580 : 3.00E-129
Blast annotation: P-loop containing nucleoside triphosphate hydrolases superfamily protein
2.Location
Scaffold: PH01000683
Strand: -
| Region | Start | End |
| gene | 456659 | 458548 |
| mRNA | 456659 | 458548 |
| exon | 456659 | 457882 |
| exon | 457924 | 458548 |
| CDS | 456967 | 457882 |
| CDS | 457924 | 458534 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000180 | transmembrane transport, integral to membrane, CAMK_AMPK (from iTAK) GH100 Glycoside_Hydrolases GH32 Glycoside_Hydrolases Golgi membrane, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF14363.5 | AAA_assoc | 38 | 130 |
| PF00004.28 | AAA | 273 | 424 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0000166 | nucleotide binding |
| GO:0005524 | ATP binding |
| GO:0017111 | nucleoside-triphosphatase activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.