PH01000684G0710's details annotation
1.Annotation
ICBR annotation: aldehyde dehydrogenase, putative, expressed
Blast result AT3G24503 : 0.00E+00
Blast annotation: aldehyde dehydrogenase 2C4
2.Location
Scaffold: PH01000684
Strand: +
| Region | Start | End |
| gene | 482091 | 487682 |
| mRNA | 482091 | 487682 |
| exon | 482091 | 482345 |
| exon | 484442 | 484584 |
| exon | 485200 | 485583 |
| exon | 485730 | 485819 |
| exon | 485972 | 486145 |
| exon | 486242 | 486379 |
| exon | 486533 | 486670 |
| exon | 486772 | 486833 |
| exon | 487249 | 487682 |
| CDS | 482225 | 482345 |
| CDS | 484442 | 484584 |
| CDS | 485200 | 485583 |
| CDS | 485730 | 485819 |
| CDS | 485972 | 486145 |
| CDS | 486242 | 486379 |
| CDS | 486533 | 486670 |
| CDS | 486772 | 486833 |
| CDS | 487249 | 487522 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000016 | protein phosphorylation, protein kinase activity, transferase activity, transferring phosphorus-containing groups, protein serine/threonine kinase activity, ATP binding, RLK-Pelle_LRR-XII-1 (from iTAK) RLK-Pelle_DLSV (from iTAK) RLK-Pelle_WAK (from iTAK) ADP_binding polysaccharide_binding transmembrane_transporter_activity WRKY Transcription_Regulator(from PlantTFDB) recognition of pollen, transmembrane transport, defense response, RLK-Pelle_L-LEC (from iTAK) membrane, integral to membrane, RLK-Pelle_SD-2b (from iTAK) RLK-Pelle_WAK_LRK10L-1 (from iTAK) ATPase activity, substrate-specific transmembrane transporter activity, RLK-Pelle_LRR-XI-1 (from iTAK) 6-phosphofructokinase complex, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00171.21 | Aldedh | 35 | 497 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Phenylpropanoid biosynthesis | coniferyl-aldehyde dehydrogenase [EC:1.2.1.68] | ko00940 | K12355 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0008152 | metabolic process |
| GO:0016491 | oxidoreductase activity |
| GO:0016620 | oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor |
| GO:0055114 | oxidation-reduction process |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.