PH01000688G0200's details annotation
1.Annotation
ICBR annotation: sec23/Sec24 zinc finger family protein, expressed
Blast result AT2G27460 : 0.00E+00
Blast annotation: sec23/sec24 transport family protein
2.Location
Scaffold: PH01000688
Strand: -
| Region | Start | End |
| gene | 128837 | 134877 |
| mRNA | 128837 | 134877 |
| exon | 128837 | 129205 |
| exon | 129299 | 129513 |
| exon | 129810 | 130075 |
| exon | 130522 | 130645 |
| exon | 130925 | 131020 |
| exon | 131620 | 131735 |
| exon | 131817 | 131898 |
| exon | 132003 | 132157 |
| exon | 132247 | 132392 |
| exon | 132546 | 132732 |
| exon | 132818 | 133041 |
| exon | 133106 | 133159 |
| exon | 133532 | 133603 |
| exon | 133724 | 134877 |
| CDS | 128979 | 129205 |
| CDS | 129299 | 129513 |
| CDS | 129810 | 130075 |
| CDS | 130522 | 130645 |
| CDS | 130925 | 131020 |
| CDS | 131620 | 131735 |
| CDS | 131817 | 131898 |
| CDS | 132003 | 132157 |
| CDS | 132247 | 132392 |
| CDS | 132546 | 132732 |
| CDS | 132818 | 133041 |
| CDS | 133106 | 133159 |
| CDS | 133532 | 133603 |
| CDS | 133724 | 134051 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000478 | HB-HD-ZIP Transcription_Regulator(from iTAK) HD-ZIP Transcription_Regulator(from PlantTFDB) AGC_RSK-2 (from iTAK) COPII vesicle coat, nucleus, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF04811.14 | Sec23_trunk | 123 | 383 |
| PF04815.14 | Sec23_helical | 517 | 624 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
| GO:0006886 | intracellular protein transport |
| GO:0006888 | ER to Golgi vesicle-mediated transport |
| GO:0008270 | zinc ion binding |
| GO:0030127 | COPII vesicle coat |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.