PH01000696G0390's details annotation
1.Annotation
ICBR annotation: tRNA-splicing endonuclease positive effector-related, putative
Blast result AT4G15570 : 1.00E-160
Blast annotation: P-loop containing nucleoside triphosphate hydrolases superfamily protein
2.Location
Scaffold: PH01000696
Strand: +
| Region | Start | End |
| gene | 260233 | 266066 |
| mRNA | 260233 | 266066 |
| exon | 260233 | 260570 |
| exon | 260663 | 260801 |
| exon | 260905 | 261044 |
| exon | 261362 | 261490 |
| exon | 261583 | 261618 |
| exon | 261659 | 261716 |
| exon | 262078 | 262177 |
| exon | 262684 | 262792 |
| exon | 262881 | 262986 |
| exon | 263167 | 263264 |
| exon | 263336 | 263440 |
| exon | 263518 | 263610 |
| exon | 264117 | 264175 |
| exon | 264257 | 264341 |
| exon | 264418 | 264777 |
| exon | 264872 | 264994 |
| exon | 265462 | 265548 |
| exon | 265626 | 266066 |
| CDS | 260445 | 260570 |
| CDS | 260663 | 260801 |
| CDS | 260905 | 261044 |
| CDS | 261362 | 261490 |
| CDS | 261583 | 261618 |
| CDS | 261659 | 261716 |
| CDS | 262078 | 262177 |
| CDS | 262684 | 262792 |
| CDS | 262881 | 262986 |
| CDS | 263167 | 263264 |
| CDS | 263336 | 263440 |
| CDS | 263518 | 263610 |
| CDS | 264117 | 264175 |
| CDS | 264257 | 264341 |
| CDS | 264418 | 264777 |
| CDS | 264872 | 264994 |
| CDS | 265462 | 265548 |
| CDS | 265626 | 265841 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF13086.5 | AAA_11 | 286 | 353 |
| PF13086.5 | AAA_11 | 368 | 414 |
| PF13087.5 | AAA_12 | 434 | 627 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.