Annotation of co-expression genes

PH01000697G0310's details annotation

1.Annotation

ICBR annotation: white-brown complex homolog protein 7, putative, expressed

Blast result AT2G01320 : 0.00E+00
Blast annotation: ABC-2 type transporter family protein

2.Location

Scaffold: PH01000697
Strand: -

RegionStartEnd
gene220323225993
mRNA220323225993
exon220323220580
exon220888220972
exon221064221276
exon221397221617
exon221824221955
exon222476222752
exon223219223420
exon224081224213
exon224519224669
exon224753224943
exon225349225993
CDS220404220580
CDS220888220972
CDS221064221276
CDS221397221617
CDS221824221955
CDS222476222752
CDS223219223420
CDS224081224213
CDS224519224669
CDS224753224943
CDS225349225558

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM001704RLK-Pelle_DLSV (from iTAK)

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00005.26ABC_tran75227
PF01061.23ABC2_membrane376587

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0000166nucleotide binding
GO:0005524ATP binding
GO:0016020membrane
GO:0016887ATPase activity
GO:0017111nucleoside-triphosphatase activity

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.