PH01000706G0160's details annotation
1.Annotation
ICBR annotation: OsDegp3 - Putative Deg protease homologue, expressed
Blast result AT5G40200 : 9.00E-112
Blast annotation: DegP protease 9
2.Location
Scaffold: PH01000706
Strand: +
| Region | Start | End |
| gene | 140345 | 143107 |
| mRNA | 140345 | 143107 |
| exon | 140345 | 141474 |
| exon | 142185 | 142384 |
| exon | 142525 | 142705 |
| exon | 142841 | 143107 |
| CDS | 140940 | 141474 |
| CDS | 142185 | 142384 |
| CDS | 142525 | 142705 |
| CDS | 142841 | 142956 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000118 |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF13365.5 | Trypsin_2 | 132 | 269 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003824 | catalytic activity |
| GO:0004252 | serine-type endopeptidase activity |
| GO:0006508 | proteolysis |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.