PH01000711G0660's details annotation
1.Annotation
ICBR annotation: spermidine synthase, putative, expressed
Blast result AT1G70310 : 8.80E-40
Blast annotation: spermidine synthase 2
2.Location
Scaffold: PH01000711
Strand: +
| Region | Start | End |
| gene | 489988 | 492720 |
| mRNA | 489988 | 492720 |
| exon | 489988 | 490308 |
| exon | 490721 | 490917 |
| exon | 491581 | 491727 |
| exon | 492066 | 492142 |
| exon | 492227 | 492349 |
| exon | 492391 | 492720 |
| CDS | 490175 | 490308 |
| CDS | 490721 | 490917 |
| CDS | 491581 | 491727 |
| CDS | 492066 | 492142 |
| CDS | 492227 | 492349 |
| CDS | 492391 | 492417 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000481 | proton-transporting two-sector ATPase complex, proton-transporting domain, proton-transporting V-type ATPase, V0 domain, SNF2 Transcription_Regulator(from iTAK) Phagosome Oxidative_phosphorylation ATP hydrolysis coupled proton transport, hydrogen ion transmembrane transporter activity, RB Transcription_Regulator(from iTAK) DDT Transcription_Regulator(from iTAK) clathrin coat of trans-Golgi network vesicle, clathrin coat of coated pit, mediator complex, PHD Transcription_Regulator(from iTAK) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF17284.1 | Spermine_synt_N | 149 | 203 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003824 | catalytic activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.