PH01000716G0700's details annotation
1.Annotation
ICBR annotation: cyclic nucleotide-gated ion channel 2, putative, expressed
Blast result AT5G15410 : 3.00E-113
Blast annotation: Cyclic nucleotide-regulated ion channel family protein
2.Location
Scaffold: PH01000716
Strand: +
| Region | Start | End |
| gene | 459723 | 467596 |
| mRNA | 459723 | 467596 |
| exon | 459723 | 461466 |
| exon | 461600 | 462404 |
| exon | 462540 | 462653 |
| exon | 464018 | 464233 |
| exon | 464817 | 464861 |
| exon | 465481 | 465627 |
| exon | 465709 | 465945 |
| exon | 466041 | 466523 |
| exon | 467163 | 467596 |
| CDS | 461429 | 461466 |
| CDS | 461600 | 462404 |
| CDS | 462540 | 462653 |
| CDS | 464018 | 464233 |
| CDS | 464817 | 464861 |
| CDS | 465481 | 465627 |
| CDS | 465709 | 465945 |
| CDS | 466041 | 466523 |
| CDS | 467163 | 467282 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.