PH01000718G0820's details annotation
1.Annotation
ICBR annotation: S10/S20 domain containing ribosomal protein, putative, expressed
Blast result AT3G13120 : 1.90E-48
Blast annotation: Ribosomal protein S10p/S20e family protein
2.Location
Scaffold: PH01000718
Strand: +
| Region | Start | End |
| gene | 509281 | 515348 |
| mRNA | 509281 | 515348 |
| exon | 509281 | 509631 |
| exon | 509829 | 509885 |
| exon | 509962 | 510046 |
| exon | 513689 | 513915 |
| exon | 514744 | 515043 |
| exon | 515109 | 515348 |
| CDS | 509443 | 509631 |
| CDS | 509829 | 509885 |
| CDS | 509962 | 510046 |
| CDS | 513689 | 513915 |
| CDS | 514744 | 515043 |
| CDS | 515109 | 515117 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00338.21 | Ribosomal_S10 | 194 | 286 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Ribosome | small subunit ribosomal protein S10 | ko03011 | K02946 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003723 | RNA binding |
| GO:0003735 | structural constituent of ribosome |
| GO:0005622 | intracellular |
| GO:0005840 | ribosome |
| GO:0006412 | translation |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.