PH01000723G0440's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT1G61150 : 2.00E-101
Blast annotation: LisH and RanBPM domains containing protein
2.Location
Scaffold: PH01000723
Strand: +
| Region | Start | End |
| gene | 279182 | 285571 |
| mRNA | 279182 | 285571 |
| exon | 279182 | 281412 |
| exon | 281504 | 281610 |
| exon | 283082 | 283213 |
| exon | 284255 | 284386 |
| exon | 284548 | 284704 |
| exon | 285309 | 285571 |
| CDS | 281250 | 281412 |
| CDS | 281504 | 281610 |
| CDS | 283082 | 283213 |
| CDS | 284255 | 284386 |
| CDS | 284548 | 284704 |
| CDS | 285309 | 285430 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000670 | NAC Transcription_Regulator(from PlantTFDB) RLK-Pelle_LRR-III (from iTAK) |
| coexpression network | CFinderM001044 | |
| coexpression network | CFinderM001598 | carboxyl- or carbamoyltransferase activity, nucleoside transmembrane transporter activity, cellular amino acid metabolic process, amino acid binding, |
| coexpression network | CFinderM001727 | protein binding, Protein_processing_in_endoplasmic_reticulum |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF08513.10 | LisH | 44 | 70 |
| PF10607.8 | CLTH | 81 | 223 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.