PH01000724G0300's details annotation
1.Annotation
ICBR annotation: 1,4-alpha-glucan-branching enzyme, chloroplast precursor, putative, expressed
Blast result AT5G03650 : 0
Blast annotation: starch branching enzyme 2.2
2.Location
Scaffold: PH01000724
Strand: +
| Region | Start | End |
| gene | 175661 | 182241 |
| mRNA | 175661 | 182241 |
| exon | 175661 | 175937 |
| exon | 176056 | 176307 |
| exon | 176448 | 176517 |
| exon | 176900 | 177169 |
| exon | 177291 | 177491 |
| exon | 178160 | 179066 |
| exon | 179357 | 179473 |
| exon | 179639 | 179701 |
| exon | 180226 | 180333 |
| exon | 180850 | 180951 |
| exon | 181163 | 181230 |
| exon | 181332 | 181413 |
| exon | 181532 | 181648 |
| exon | 181731 | 182241 |
| CDS | 175760 | 175937 |
| CDS | 176056 | 176307 |
| CDS | 176448 | 176517 |
| CDS | 176900 | 177169 |
| CDS | 177291 | 177491 |
| CDS | 178160 | 179066 |
| CDS | 179357 | 179473 |
| CDS | 179639 | 179701 |
| CDS | 180226 | 180333 |
| CDS | 180850 | 180951 |
| CDS | 181163 | 181230 |
| CDS | 181332 | 181413 |
| CDS | 181532 | 181648 |
| CDS | 181731 | 181988 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF02922.17 | CBM_48 | 147 | 230 |
| PF00128.23 | Alpha-amylase | 385 | 501 |
| PF02806.17 | Alpha-amylase_C | 748 | 849 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Starch and sucrose metabolism | 1,4-alpha-glucan branching enzyme [EC:2.4.1.18] | ko00500 | K00700 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003824 | catalytic activity |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| GO:0043169 | cation binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.