PH01000726G0090's details annotation
1.Annotation
ICBR annotation: glycine-rich protein, putative, expressed
Blast result AT1G80000 : 9.50E-56
Blast annotation: CASC3/Barentsz eIF4AIII binding
2.Location
Scaffold: PH01000726
Strand: -
| Region | Start | End |
| gene | 43814 | 53656 |
| mRNA | 43814 | 53656 |
| exon | 43814 | 44248 |
| exon | 44373 | 44448 |
| exon | 44545 | 44675 |
| exon | 46162 | 46247 |
| exon | 47079 | 47156 |
| exon | 47267 | 47307 |
| exon | 47368 | 47453 |
| exon | 47563 | 47603 |
| exon | 47877 | 47996 |
| exon | 48559 | 48673 |
| exon | 48788 | 49638 |
| exon | 49746 | 49963 |
| exon | 50048 | 50147 |
| exon | 52172 | 53656 |
| CDS | 44118 | 44248 |
| CDS | 44373 | 44448 |
| CDS | 44545 | 44675 |
| CDS | 46162 | 46247 |
| CDS | 47079 | 47156 |
| CDS | 47267 | 47307 |
| CDS | 47368 | 47453 |
| CDS | 47563 | 47603 |
| CDS | 47877 | 47996 |
| CDS | 48559 | 48673 |
| CDS | 48788 | 49638 |
| CDS | 49746 | 49963 |
| CDS | 50048 | 50147 |
| CDS | 52172 | 52731 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001165 | acyl-CoA_hydrolase_activity acyl-CoA metabolic process, histone modification, translational initiation, transcription initiation, DNA-dependent, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF09405.9 | Btz | 137 | 234 |
| PF00403.25 | HMA | 814 | 867 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0030001 | metal ion transport |
| GO:0046872 | metal ion binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.