PH01000730G0520's details annotation
1.Annotation
ICBR annotation: ubiquitin-conjugating enzyme E2 O, putative, expressed
Blast result AT3G15355 : 5.20E-81
Blast annotation: ubiquitin-conjugating enzyme 25
2.Location
Scaffold: PH01000730
Strand: +
| Region | Start | End |
| gene | 395952 | 404976 |
| mRNA | 395952 | 404976 |
| exon | 395952 | 398225 |
| exon | 398338 | 398443 |
| exon | 402434 | 402844 |
| exon | 402932 | 402995 |
| exon | 403541 | 403680 |
| exon | 403749 | 404060 |
| exon | 404481 | 404976 |
| CDS | 398212 | 398225 |
| CDS | 398338 | 398443 |
| CDS | 402434 | 402844 |
| CDS | 402932 | 402995 |
| CDS | 403541 | 403680 |
| CDS | 403749 | 404060 |
| CDS | 404481 | 404807 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00179.25 | UQ_con | 185 | 318 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Ubiquitin mediated proteolysis | ubiquitin-conjugating enzyme E2 O [EC:6.3.2.19] | ko04120 | K10581 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0016881 | acid-amino acid ligase activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.