PH01000735G0260's details annotation
1.Annotation
ICBR annotation: ubiquitin fusion degradation protein, putative, expressed
Blast result AT2G21270 : 1.00E-116
Blast annotation: ubiquitin fusion degradation 1
2.Location
Scaffold: PH01000735
Strand: +
| Region | Start | End |
| gene | 134927 | 138723 |
| mRNA | 134927 | 138723 |
| exon | 134927 | 135434 |
| exon | 136407 | 136431 |
| exon | 136514 | 136546 |
| exon | 136621 | 136646 |
| exon | 137164 | 137387 |
| exon | 137489 | 137727 |
| exon | 137911 | 138723 |
| CDS | 135271 | 135434 |
| CDS | 136407 | 136431 |
| CDS | 136514 | 136546 |
| CDS | 136621 | 136646 |
| CDS | 137164 | 137387 |
| CDS | 137489 | 137727 |
| CDS | 137911 | 138000 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000745 | GMP synthase (glutamine-hydrolyzing) activity, pyrophosphatase_activity CMGC_GSK (from iTAK) protein-arginine_deiminase_activity |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF03152.13 | UFD1 | 13 | 184 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Protein processing in endoplasmic reticulum | ubiquitin fusion degradation protein 1 | ko04141 | K14016 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0006511 | ubiquitin-dependent protein catabolic process |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.