PH01000738G0130's details annotation
1.Annotation
ICBR annotation: pre-mRNA-splicing factor ATP-dependent RNA helicase, putative, expressed
Blast result AT3G26560 : 0.00E+00
Blast annotation: ATP-dependent RNA helicase, putative
2.Location
Scaffold: PH01000738
Strand: -
| Region | Start | End |
| gene | 119949 | 126049 |
| mRNA | 119949 | 126049 |
| exon | 119949 | 126049 |
| CDS | 120482 | 123700 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000097 | GT59 GlycosylTransferases mRNA_cleavage_factor_complex Other_types_of_O-glycan_biosynthesis |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00575.22 | S1 | 121 | 179 |
| PF00270.28 | DEAD | 429 | 575 |
| PF00271.30 | Helicase_C | 618 | 749 |
| PF04408.22 | HA2 | 811 | 899 |
| PF07717.15 | OB_NTP_bind | 957 | 1032 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Spliceosome | ATP-dependent RNA helicase DHX8/PRP22 [EC:3.6.4.13] | ko03041 | K12818 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003676 | nucleic acid binding |
| GO:0003723 | RNA binding |
| GO:0004386 | helicase activity |
| GO:0005524 | ATP binding |
| GO:0008026 | ATP-dependent helicase activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.