Annotation of co-expression genes

PH01000743G0550's details annotation

1.Annotation

ICBR annotation: glutathione reductase, putative, expressed

Blast result AT3G24170 : 0.00E+00
Blast annotation: glutathione-disulfide reductase

2.Location

Scaffold: PH01000743
Strand: +

RegionStartEnd
gene423170428345
mRNA423170428345
exon423170424248
exon424386424450
exon424574424643
exon424960425052
exon425140425343
exon425660425733
exon425836425919
exon426397426484
exon426575426656
exon427103427147
exon427478427551
exon427767427874
exon427981428345
CDS424114424248
CDS424386424450
CDS424574424643
CDS424960425052
CDS425140425343
CDS425660425733
CDS425836425919
CDS426397426484
CDS426575426656
CDS427103427147
CDS427478427551
CDS427767427874
CDS427981428049

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF07992.13Pyr_redox_221348
PF02852.21Pyr_redox_dim368477

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
Glutathione metabolismglutathione reductase (NADPH) [EC:1.8.1.7]ko00480K00383

10.Gene Ontology

GO AccessionGO Annotation
GO:0004362glutathione-disulfide reductase activity
GO:0005737cytoplasm
GO:0006749glutathione metabolic process
GO:0016491oxidoreductase activity
GO:0016668oxidoreductase activity, acting on a sulfur group of donors, NAD(P) as acceptor
GO:0045454cell redox homeostasis
GO:0050660flavin adenine dinucleotide binding
GO:0050661NADP binding
GO:0055114oxidation-reduction process

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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