PH01000746G0610's details annotation
1.Annotation
ICBR annotation: ras-related protein, putative, expressed
Blast result AT1G52280 : 7.70E-51
Blast annotation: RAB GTPase homolog G3D
2.Location
Scaffold: PH01000746
Strand: -
| Region | Start | End |
| gene | 433177 | 437578 |
| mRNA | 433177 | 437578 |
| exon | 433177 | 434261 |
| exon | 434342 | 434422 |
| exon | 434504 | 434650 |
| exon | 436006 | 436105 |
| exon | 436340 | 437578 |
| CDS | 434112 | 434261 |
| CDS | 434342 | 434422 |
| CDS | 434504 | 434650 |
| CDS | 436006 | 436105 |
| CDS | 436340 | 436392 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000745 | GMP synthase (glutamine-hydrolyzing) activity, pyrophosphatase_activity CMGC_GSK (from iTAK) protein-arginine_deiminase_activity |
| coexpression network | CFinderM001383 | Metabolism_of_xenobiotics_by_cytochrome_P450 Drug_metabolism_-_cytochrome_P450 Glutathione_metabolism protein transport, small GTPase mediated signal transduction, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00071.21 | Ras | 2 | 85 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005525 | GTP binding |
| GO:0007264 | small GTPase mediated signal transduction |
| GO:0015031 | protein transport |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.