Annotation of co-expression genes

PH01000748G0320's details annotation

1.Annotation

ICBR annotation: mitotic checkpoint serine/threonine-protein kinase BUB1, putative, expressed

Blast result AT2G20635 : 4.00E-73
Blast annotation: ATP binding;protein kinases;protein serine/threonine kinases

2.Location

Scaffold: PH01000748
Strand: -

RegionStartEnd
gene285181291812
mRNA285181291812
exon285181286349
exon286739286896
exon287055287144
exon287232287303
exon287388287491
exon287711287798
exon287878287988
exon290072290137
exon290432290822
exon291272291429
exon291493291812
CDS286109286349
CDS286739286896
CDS287055287144
CDS287232287303
CDS287388287491
CDS287711287798
CDS287878287988
CDS290072290137
CDS290432290822
CDS291272291429
CDS291493291702

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF08311.11Mad3_BUB1_I42121
PF00069.24Pkinase414479

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0004672protein kinase activity
GO:0004674protein serine/threonine kinase activity
GO:0005524ATP binding
GO:0006468protein phosphorylation
GO:0016772transferase activity, transferring phosphorus-containing groups

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.