PH01000748G0470's details annotation
1.Annotation
ICBR annotation: protein kinase PKN/PRK1, effector, putative, expressed
Blast result AT3G14750 : 1.90E-51
Blast annotation: -
2.Location
Scaffold: PH01000748
Strand: -
| Region | Start | End |
| gene | 361215 | 364886 |
| mRNA | 361215 | 364886 |
| exon | 361215 | 361460 |
| exon | 361552 | 361628 |
| exon | 362003 | 362166 |
| exon | 362620 | 362852 |
| exon | 364210 | 364425 |
| exon | 364750 | 364886 |
| CDS | 361365 | 361460 |
| CDS | 361552 | 361628 |
| CDS | 362003 | 362166 |
| CDS | 362620 | 362852 |
| CDS | 364210 | 364425 |
| CDS | 364750 | 364857 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000028 | proton-transporting ATP synthase complex, catalytic core F(1), proton-transporting ATPase activity, rotational mechanism, hydrogen ion transporting ATP synthase activity, rotational mechanism, ATP synthesis coupled proton transport, |
| coexpression network | CFinderM000090 | ribosome assembly, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.