PH01000748G0700's details annotation
1.Annotation
ICBR annotation: WD domain, G-beta repeat domain containing protein, expressed
Blast result AT1G29320 : 2.70E-95
Blast annotation: Transducin/WD40 repeat-like superfamily protein
2.Location
Scaffold: PH01000748
Strand: +
| Region | Start | End |
| gene | 512209 | 518279 |
| mRNA | 512209 | 518279 |
| exon | 512209 | 513262 |
| exon | 513380 | 513495 |
| exon | 513606 | 513635 |
| exon | 513717 | 513856 |
| exon | 514024 | 514200 |
| exon | 514356 | 514419 |
| exon | 514511 | 514618 |
| exon | 514988 | 515141 |
| exon | 516202 | 516309 |
| exon | 517170 | 517225 |
| exon | 517738 | 517795 |
| exon | 518048 | 518279 |
| CDS | 513181 | 513262 |
| CDS | 513380 | 513495 |
| CDS | 513606 | 513635 |
| CDS | 513717 | 513856 |
| CDS | 514024 | 514200 |
| CDS | 514356 | 514419 |
| CDS | 514511 | 514618 |
| CDS | 514988 | 515141 |
| CDS | 516202 | 516309 |
| CDS | 517170 | 517225 |
| CDS | 517738 | 517795 |
| CDS | 518048 | 518271 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.