Annotation of co-expression genes

PH01000749G0810's details annotation

1.Annotation

ICBR annotation: SNF2 family N-terminal domain containing protein, expressed

Blast result AT5G22750 : 0.00E+00
Blast annotation: DNA/RNA helicase protein

2.Location

Scaffold: PH01000749
Strand: +

RegionStartEnd
gene503204517139
mRNA503204517139
exon503204506983
exon507088507221
exon507313507448
exon507779507832
exon507910508053
exon508144508295
exon508389508473
exon508586508855
exon509024509170
exon509713509868
exon510029510096
exon512361512690
exon513527513649
exon513724513823
exon513906514018
exon514234514509
exon514608514808
exon515528515621
exon515742515813
exon516466516564
exon516671516748
exon517128517139
CDS506471506983
CDS507088507221
CDS507313507448
CDS507779507832
CDS507910508053
CDS508144508295
CDS508389508473
CDS508586508855
CDS509024509170
CDS509713509868
CDS510029510096
CDS512361512690
CDS513527513649
CDS513724513823
CDS513906514018
CDS514234514509
CDS514608514808
CDS515528515621
CDS515742515813
CDS516466516564
CDS516671516748
CDS517128517130

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction details
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
Transcription_Regulator(from iTAK)SNF2

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF08797.10HIRAN111215
PF00176.22SNF2_N342622
PF00176.22SNF2_N725840
PF13920.5zf-C3HC4_3892938
PF00271.30Helicase_C9641076

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0003676nucleic acid binding
GO:0003677DNA binding
GO:0004386helicase activity
GO:0005515protein binding
GO:0005524ATP binding
GO:0008270zinc ion binding
GO:0016818hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.