Annotation of co-expression genes

PH01000751G0750's details annotation

1.Annotation

ICBR annotation: metal cation transporter, putative, expressed

Blast result AT1G05300 : 1.70E-74
Blast annotation: zinc transporter 5 precursor

2.Location

Scaffold: PH01000751
Strand: -

RegionStartEnd
gene527924530873
mRNA527924530873
exon527924528281
exon529550529699
exon530140530873
CDS527976528281
CDS529550529699
CDS530140530841

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000016protein phosphorylation,
protein kinase activity,
transferase activity, transferring phosphorus-containing groups,
protein serine/threonine kinase activity,
ATP binding,
RLK-Pelle_LRR-XII-1 (from iTAK)
RLK-Pelle_DLSV (from iTAK)
RLK-Pelle_WAK (from iTAK)
ADP_binding
polysaccharide_binding
transmembrane_transporter_activity
WRKY Transcription_Regulator(from PlantTFDB)
recognition of pollen,
transmembrane transport,
defense response,
RLK-Pelle_L-LEC (from iTAK)
membrane,
integral to membrane,
RLK-Pelle_SD-2b (from iTAK)
RLK-Pelle_WAK_LRK10L-1 (from iTAK)
ATPase activity,
substrate-specific transmembrane transporter activity,
RLK-Pelle_LRR-XI-1 (from iTAK)
6-phosphofructokinase complex,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF02535.21Zip48382

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0005385zinc ion transmembrane transporter activity
GO:0016020membrane
GO:0016021integral to membrane
GO:0030001metal ion transport
GO:0046873metal ion transmembrane transporter activity
GO:0055085transmembrane transport
GO:0071577zinc ion transmembrane transport

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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