PH01000767G0430's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT5G16280 : 0.00E+00
Blast annotation: Tetratricopeptide repeat (TPR)-like superfamily protein
2.Location
Scaffold: PH01000767
Strand: +
| Region | Start | End |
| gene | 303017 | 312437 |
| mRNA | 303017 | 312437 |
| exon | 303017 | 303863 |
| exon | 304294 | 304439 |
| exon | 304780 | 304877 |
| exon | 304958 | 305081 |
| exon | 305169 | 305276 |
| exon | 305547 | 305691 |
| exon | 307520 | 307630 |
| exon | 307730 | 307793 |
| exon | 307891 | 307963 |
| exon | 308761 | 308937 |
| exon | 309017 | 309127 |
| exon | 309281 | 309451 |
| exon | 309523 | 309702 |
| exon | 310465 | 310557 |
| exon | 310758 | 310991 |
| exon | 311144 | 311302 |
| exon | 311532 | 311665 |
| exon | 311731 | 312437 |
| CDS | 303506 | 303863 |
| CDS | 304294 | 304439 |
| CDS | 304780 | 304877 |
| CDS | 304958 | 305081 |
| CDS | 305169 | 305276 |
| CDS | 305547 | 305691 |
| CDS | 307520 | 307630 |
| CDS | 307730 | 307793 |
| CDS | 307891 | 307963 |
| CDS | 308761 | 308937 |
| CDS | 309017 | 309127 |
| CDS | 309281 | 309451 |
| CDS | 309523 | 309702 |
| CDS | 310465 | 310557 |
| CDS | 310758 | 310991 |
| CDS | 311144 | 311302 |
| CDS | 311532 | 311665 |
| CDS | 311731 | 312262 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000931 | Phenylalanine,_tyrosine_and_tryptophan_biosynthesis signal recognition particle, ubiquitin thiolesterase activity, ubiquitin-dependent protein catabolic process, chorismate metabolic process, aromatic amino acid family biosynthetic process, SRP-dependent cotranslational protein targeting to membrane, chorismate mutase activity, 7S RNA binding, Protein_export |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.