PH01000769G0620's details annotation
1.Annotation
ICBR annotation: MYB family transcription factor, putative, expressed
Blast result AT5G55020 : 1.20E-28
Blast annotation: myb domain protein 120
2.Location
Scaffold: PH01000769
Strand: -
| Region | Start | End |
| gene | 447927 | 455688 |
| mRNA | 447927 | 455688 |
| exon | 447927 | 448350 |
| exon | 448417 | 449545 |
| exon | 450451 | 450622 |
| exon | 452893 | 453036 |
| exon | 453456 | 453987 |
| exon | 454191 | 455688 |
| CDS | 448049 | 448350 |
| CDS | 448417 | 449545 |
| CDS | 450451 | 450622 |
| CDS | 452893 | 453036 |
| CDS | 453456 | 453987 |
| CDS | 454191 | 454317 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000290 | autophagy, Valine,_leucine_and_isoleucine_degradation Endocytosis |
| coexpression network | CFinderM001388 | Protein_processing_in_endoplasmic_reticulum GT48 GlycosylTransferases Nucleotide_excision_repair outer membrane-bounded periplasmic space, 1,3-beta-D-glucan synthase complex, proteasomal ubiquitin-dependent protein catabolic process, (1->3)-beta-D-glucan biosynthetic process, nucleotide-excision repair, MYB_related Transcription_Regulator(from PlantTFDB) MYB-related Transcription_Regulator(from iTAK) glycerol ether metabolic process, |
| coexpression network | CFinderM001389 | outer membrane-bounded periplasmic space, MYB_related Transcription_Regulator(from PlantTFDB) MYB-related Transcription_Regulator(from iTAK) Protein_processing_in_endoplasmic_reticulum |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | MYB-related |
| Transcription_Regulator(from PlantTFDB) | MYB_related |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00249.30 | Myb_DNA-binding | 146 | 193 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003677 | DNA binding |
| GO:0003682 | chromatin binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.