PH01000775G0260's details annotation
1.Annotation
ICBR annotation: guanine nucleotide exchange family protein, putative, expressed
Blast result AT5G27970 : 1.60E-87
Blast annotation: ARM repeat superfamily protein
2.Location
Scaffold: PH01000775
Strand: +
| Region | Start | End |
| gene | 140400 | 146722 |
| mRNA | 140400 | 146722 |
| exon | 140400 | 141116 |
| exon | 141403 | 141526 |
| exon | 141603 | 141721 |
| exon | 142405 | 142609 |
| exon | 142707 | 142878 |
| exon | 144293 | 144476 |
| exon | 144552 | 144727 |
| exon | 145111 | 145232 |
| exon | 145392 | 145593 |
| exon | 146121 | 146722 |
| CDS | 141036 | 141116 |
| CDS | 141403 | 141526 |
| CDS | 141603 | 141721 |
| CDS | 142405 | 142609 |
| CDS | 142707 | 142878 |
| CDS | 144293 | 144476 |
| CDS | 144552 | 144727 |
| CDS | 145111 | 145232 |
| CDS | 145392 | 145593 |
| CDS | 146121 | 146217 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000762 | Endocytosis phospholipid transport, regulation of ARF protein signal transduction, membrane coat, clathrin adaptor complex, |
| coexpression network | CFinderM001745 | GT13 GlycosylTransferases Golgi membrane, mannosyl-oligosaccharide 1,2-alpha-mannosidase activity, N-Glycan_biosynthesis Glycerolipid_metabolism Various_types_of_N-glycan_biosynthesis Glycerophospholipid_metabolism transferase activity, transferring acyl groups, acetylglucosaminyltransferase activity, protein glycosylation, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.