PH01000775G0640's details annotation
1.Annotation
ICBR annotation: glycosyl hydrolase family 47 domain contain protein, expressed
Blast result AT5G43710 : 5.80E-88
Blast annotation: Glycosyl hydrolase family 47 protein
2.Location
Scaffold: PH01000775
Strand: +
| Region | Start | End |
| gene | 400059 | 405827 |
| mRNA | 400059 | 405827 |
| exon | 400059 | 400667 |
| exon | 400886 | 400926 |
| exon | 400996 | 401046 |
| exon | 401824 | 401937 |
| exon | 402231 | 402310 |
| exon | 402682 | 402817 |
| exon | 403214 | 403284 |
| exon | 403930 | 404010 |
| exon | 404100 | 404337 |
| exon | 404829 | 404978 |
| exon | 405350 | 405827 |
| CDS | 400658 | 400667 |
| CDS | 400886 | 400926 |
| CDS | 400996 | 401046 |
| CDS | 401824 | 401937 |
| CDS | 402231 | 402310 |
| CDS | 402682 | 402817 |
| CDS | 403214 | 403284 |
| CDS | 403930 | 404010 |
| CDS | 404100 | 404337 |
| CDS | 404829 | 404978 |
| CDS | 405350 | 405751 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000722 | integral_component_of_peroxisomal_membrane GH47 Glycoside_Hydrolases autophagy, peroxisome_fission calcium ion binding, mannosyl-oligosaccharide 1,2-alpha-mannosidase activity, ribonuclease III activity, Protein_processing_in_endoplasmic_reticulum |
| coexpression network | CFinderM000774 | GH47 Glycoside_Hydrolases membrane, ion transport, cellular process, Protein_processing_in_endoplasmic_reticulum |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Glycoside_Hydrolases | GH47 |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01532.19 | Glyco_hydro_47 | 38 | 153 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Protein processing in endoplasmic reticulum | ER degradation enhancer, mannosidase alpha-like 2 | ko04141 | K10085 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0004571 | mannosyl-oligosaccharide 1,2-alpha-mannosidase activity |
| GO:0005509 | calcium ion binding |
| GO:0016020 | membrane |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.