PH01000776G0530's details annotation
1.Annotation
ICBR annotation: FAD binding domain of DNA photolyase domain containing protein, expressed
Blast result AT3G15620 : 2.00E-109
Blast annotation: DNA photolyase family protein
2.Location
Scaffold: PH01000776
Strand: -
| Region | Start | End |
| gene | 447547 | 451503 |
| mRNA | 447547 | 451503 |
| exon | 447547 | 448434 |
| exon | 448521 | 448616 |
| exon | 448695 | 448782 |
| exon | 449181 | 449222 |
| exon | 449521 | 449592 |
| exon | 449734 | 449820 |
| exon | 449900 | 449983 |
| exon | 450066 | 450164 |
| exon | 450252 | 450338 |
| exon | 450475 | 450510 |
| exon | 451023 | 451145 |
| exon | 451275 | 451503 |
| CDS | 448247 | 448434 |
| CDS | 448521 | 448616 |
| CDS | 448695 | 448782 |
| CDS | 449181 | 449222 |
| CDS | 449521 | 449592 |
| CDS | 449734 | 449820 |
| CDS | 449900 | 449983 |
| CDS | 450066 | 450164 |
| CDS | 450252 | 450338 |
| CDS | 450475 | 450510 |
| CDS | 451023 | 451145 |
| CDS | 451275 | 451277 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF03441.13 | FAD_binding_7 | 115 | 199 |
| PF03441.13 | FAD_binding_7 | 208 | 287 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003913 | DNA photolyase activity |
| GO:0006281 | DNA repair |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.