Annotation of co-expression genes

PH01000778G0140's details annotation

1.Annotation

ICBR annotation: metallo-beta-lactamase family protein, putative, expressed

Blast result AT3G13800 : 2.10E-85
Blast annotation: Metallo-hydrolase/oxidoreductase superfamily protein

2.Location

Scaffold: PH01000778
Strand: -

RegionStartEnd
gene7987384211
mRNA7987384211
exon7987380955
exon8116681207
exon8129082449
exon8260982952
exon8325384211
CDS8060580955
CDS8116681207
CDS8129082449
CDS8260982952
CDS8325383917

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF12706.6Lactamase_B_2354539
PF00854.20PTR2674725
PF00854.20PTR2757825

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0005215transporter activity
GO:0006810transport
GO:0016020membrane
GO:0016787hydrolase activity

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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