PH01000778G0770's details annotation
1.Annotation
ICBR annotation: peroxiredoxin, putative, expressed
Blast result AT1G65970 : 1.30E-70
Blast annotation: thioredoxin-dependent peroxidase 2
2.Location
Scaffold: PH01000778
Strand: -
| Region | Start | End |
| gene | 527504 | 534365 |
| mRNA | 527504 | 534365 |
| exon | 527504 | 527851 |
| exon | 528446 | 528525 |
| exon | 529407 | 529886 |
| exon | 530826 | 530923 |
| exon | 531486 | 534365 |
| CDS | 527598 | 527851 |
| CDS | 528446 | 528525 |
| CDS | 529407 | 529886 |
| CDS | 530826 | 530923 |
| CDS | 531486 | 531608 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF08534.9 | Redoxin | 188 | 341 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0016491 | oxidoreductase activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.