Annotation of co-expression genes

PH01000784G0580's details annotation

1.Annotation

ICBR annotation: cytochrome c-type biogenesis protein dbsD-like, putative, expressed

Blast result AT5G54290 : 3.60E-74
Blast annotation: cytochrome c biogenesis protein family

2.Location

Scaffold: PH01000784
Strand: -

RegionStartEnd
gene387567393961
mRNA387567393961
exon387567388720
exon389077389256
exon390989391018
exon391201391293
exon391605391705
exon391822391894
exon392162392323
exon392481392512
exon392870392924
exon393302393357
exon393625393961
CDS388679388720
CDS389077389256
CDS390989391018
CDS391201391293
CDS391605391705
CDS391822391894
CDS392162392323
CDS392481392512
CDS392870392924
CDS393302393357
CDS393625393712

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF02683.14DsbD72224

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0016020membrane
GO:0017004cytochrome complex assembly
GO:0055114oxidation-reduction process

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.