PH01000787G0760's details annotation
1.Annotation
ICBR annotation: hypothetical_protein
Blast result AT5G45540 : 5.80E-38
Blast annotation: Protein of unknown function (DUF594)
2.Location
Scaffold: PH01000787
Strand: +
| Region | Start | End |
| gene | 492294 | 494861 |
| mRNA | 492294 | 494861 |
| exon | 492294 | 494861 |
| CDS | 492375 | 494645 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000060 | GT1 GlycosylTransferases |
| coexpression network | CFinderM000124 | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, nitrogen compound metabolic process, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF13968.5 | DUF4220 | 57 | 385 |
| PF04578.12 | DUF594 | 665 | 716 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.