PH01000789G0020's details annotation
1.Annotation
ICBR annotation: nucleolar complex protein 2, putative, expressed
Blast result AT2G18220 : 0.00E+00
Blast annotation: Noc2p family
2.Location
Scaffold: PH01000789
Strand: -
| Region | Start | End |
| gene | 6772 | 14269 |
| mRNA | 6772 | 14269 |
| exon | 6772 | 7179 |
| exon | 7264 | 7398 |
| exon | 7618 | 7712 |
| exon | 7814 | 7900 |
| exon | 7987 | 8193 |
| exon | 8273 | 8602 |
| exon | 8942 | 9256 |
| exon | 9362 | 9871 |
| exon | 9965 | 10036 |
| exon | 11240 | 11385 |
| exon | 11487 | 14269 |
| CDS | 6876 | 7179 |
| CDS | 7264 | 7398 |
| CDS | 7618 | 7712 |
| CDS | 7814 | 7900 |
| CDS | 7987 | 8193 |
| CDS | 8273 | 8602 |
| CDS | 8942 | 9256 |
| CDS | 9362 | 9871 |
| CDS | 9965 | 10036 |
| CDS | 11240 | 11385 |
| CDS | 11487 | 11508 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001133 | tRNA_(cytosine-5-)-methyltransferase_activity RNA modification, C3H Transcription_Regulator(from PlantTFDB) |
| coexpression network | CFinderM001667 | spliceosomal_tri-snRNP_complex_assembly chromosome, centromeric region, U4/U6_x_U5_tri-snRNP_complex chromosome, DNA topological change, mitosis, nuclear mRNA splicing, via spliceosome, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF03715.12 | Noc2 | 282 | 579 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.